Have you checked your stringers and Transom to ensure they have not begun to rot? If so, what was your method? If NOT, WHY NOT! If they are Wet they will NOT dry out, but only continue to rot and in 2 or three years your boat will be UNSAFE to operate and UNSELLABLE! Since you have the deck out, you should consider CHECKING EVERYTHING and then doing it RIGHT. BUT that is just MY OPINION more